Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGMSNLTRLSEFILLGLSSRSEDQRPLFALFLIIYLVTLMGNLLIILAIHSDPRLQNPMYFFLSILSFADICYTTVIVPKMLVNFLSEKKTIS--YAECLAQMYFFLVFGNIDSYLLAAMAINRCVAICNPFHYVTVMNRRCCVLLLAFPITFSYFHSLLHVLLVNRLTFCTSNVIHHFFCD----VNPVLKLSCSSTFVNEIVAMTEGLASVMAPFVCIIISYLRILIA----VLKIPS-AAGKHKAFSTCSSHLTVVIL-----FYGSISYVYLQPLSSYTVKDRIATINYTVLTSVLNPFIYSLRNKDMKRGLQKLINKIKSQMSRFSTKTNKICGP |
| 4LDL Chain:A ((191-461)) | --------------------------------LIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIET--LCVIAVDRYFAITSPFKYQSLLTKNKARVI------------ILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQ---KFALKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGY--VNSGFNPLIYC-RSPDFRIAFQELLCL------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LDL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -200172 for 1856 contacts (-107.9/contact) +
2D Compatibility (PS) -25490 + (NN) -4445 + (LL) 5336
1D Compatibility (HY) -26400 + (ID) 3400
Total energy: -254571.0 ( -137.16 by residue)
QMean score : 0.321
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