Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEPQNTTQVSMFVLLGFSQTQELQKFLFLLFLLVYVTTIVGNLLIMVTVTFDCRLHTPMYFLLRNLALIDLCYSTVTSPKMLVDFLHETKTISYQGCMAQIFFFHLLGGGTVFFLSVMAYDRYIAISQPLRYVTIMNTQLCVGLVVAAWVGGFVHSIVQLALILPLPFCG-PNILDNFY-CDVPQVLRLAC--TDTSLLEFLMISNSGLLVIIWFLLLLISYTVILVMLRSHSGKAR------RKAASTCTTHI------IVVSMIFIPC------IYIYTWPFTP-------FLMDKAVSISYTVMTPMLNPMIYTLRNQDMKAAMRRLGKCLVICRE |
| 3RFM Chain:A ((14-302)) | -------------------------------LAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSFA---IGLTPMLGWNNCGQP-------GCGEGQV---ACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFAAARRQLKQMESQPLPGERARSTLQKEVHAAKSAAIIAGLFALCWLPLHIINCFTF-FCPDCSHAPLWLMYLAIVLAHT--NSVVNPFIYAYRIREFRQTFRKIIRS------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RFM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -239751 for 1880 contacts (-127.5/contact) +
2D Compatibility (PS) -25298 + (NN) -5803 + (LL) 4972
1D Compatibility (HY) -26000 + (ID) 3550
Total energy: -295430.0 ( -157.14 by residue)
QMean score : 0.279
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