Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MENKTEVTQFILLGLTNDSELQVPLFITFPFIYIITLVGNLGIIVLIFWDSCLHNPMYFFLSNLSLVDFCYSSAVTPIVMAGFLIEDKVISYNACAA-QMYIFVA-----FATVENYLLASMAYDRYAAVCKPLHYTTTMTTTVCARLAIGSYLCGFLNASIHTGDTFSLSFC---KSNEVHHFFCDIPAVMVLSCSDRHISELV-LIYVVSFNIF----IALLVILISYTFIFITILKM------------HSASVYQKPLSTCASHFIAVGIFYGTII-------FMYLQPSSSHSMDTDKMAPVFYTMVIPMLNPLVYSLRNKEVKSAFKKVVEKAKLSVGWSV |
| 3RFM Chain:A ((16-304)) | -------------------------------IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFAI--------TISTGFCAACHGCLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGT---RAAGIIAICWVLSFAIGLTPMLGWNNCGQP--------GCGEGQVACL------FEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFAAARRQLKQMESQPLPGERARSTLQKEVHAAKSAAIIAGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLAHTNSVVNPFIYAYRIREFRQTFRKIIRS--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RFM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -233094 for 1818 contacts (-128.2/contact) +
2D Compatibility (PS) -24555 + (NN) 268 + (LL) 4592
1D Compatibility (HY) -21600 + (ID) 3400
Total energy: -277789.0 ( -152.80 by residue)
QMean score : 0.269
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