Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEWDNGTGQALGLPPTTCVYRENFKQLLLPPVYSAVLAAGLPLNICVITQICTSRRALTRTAVYTLNLALADLLYACSLPLLIYNYAQGDHWPFGDFACRLVRFLFYANLHGSILFLTCISFQRYLGICHPLAPWHKRGGRRAAWLVCVAVWLAVTTQCLPTAIFAATGIQRNRTVC-YDLSPPALATHYMPYGMALTVIGFLLPFAALLACYCLLACRLCRQ---DGPAEPVAQERRGKAARMAVVVAAAFAISFLPFHITKTAYLAVRSTPGVPCTVLEAFAAAYKGTRPFASANSVLDPILFYFTQKKFRRRPHELLQKLTAKWQRQGR |
| 5C1M Chain:A ((23-294)) | -------------------------------LYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSVNYLMGT-WPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAK-IVNVCNWILSSAIGLPVMFMATTKYRQGSIDCTLTFSHPTWYWENL-LKICVFIFAFIMPVLIITVCYGLMILRLKSVRMLSGSKEKDRNLRR--ITRMVLVVVAVFIVCWTPIHI----YVIIKALITIPETTFQ--TVSWHFCIALGYTNSCLNPVLYAFLDENFKRCF---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 5C1M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -218620 for 1996 contacts (-109.5/contact) +
2D Compatibility (PS) -28579 + (NN) -14550 + (LL) 3432
1D Compatibility (HY) -27600 + (ID) 4200
Total energy: -290117.0 ( -145.35 by residue)
QMean score : 0.270
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