Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLRLFYFSAIIASVILNFVGIIMNLFITVVNCKTWVKSHRISSSDRILFSLGITRFLMLGLFLVNTIYFVSSNTERSVY-LSAFFVLCFMFLDSSSVWFVTLLNILYCVKITNFQHSVFLLLKRNISPKIPRLLLACVLISAFTTCLY-ITLSQASPFPELVTTRNNTSF--NISEG--IL-SLVVSLVLSSSLQFIINVTSASLLIHSLRRHIQKMQKNATGFWNPQTEAHVGAMKLMVYFLILYIPYSVATLVQYLPFYAGMDMGTKSICLIFATLYSPGHSVLIIITHPKLKTTAKKILCFKK |
| 3ODU Chain:A ((48-243)) | -----KIFLPTIYSIIFLTGIVGNGLVILVMGYQ---KKLRSMTDKYRLHLSVADLLFVITLPFWAVDAV-AN-WYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVH---ATNSQ-RPRKLLAEKVVYVGVWIPALLLTIPDFIFANV------SE-ADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLD |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ODU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -122230 for 1268 contacts (-96.4/contact) +
2D Compatibility (PS) -18730 + (NN) -145 + (LL) 1824
1D Compatibility (HY) -10400 + (ID) 1150
Total energy: -150831.0 ( -118.95 by residue)
QMean score : 0.130
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