Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MALTPESPSSFPGLAATGSSVPEPPGGPNATLNSSWASPTEPSSLEDLVATGTIGTLLSAMGVVGVVGNAYTLVVTCRSLRAVASMYVYVVNLALADLLYLLSIPFIVATYVTKEWHFGDVGCRVLFGLDFLTMHASIFTLTVMSSERYAAVLRPLDTVQ-RPKGYRKLLALGTWLLALLLTLPVMLAMRLVR-RGPKSLCL-----PAWGPRAHRAYLTLLFATSIAGPGLLIGLLYARLARAYRRSQRAS-FKRARRPGARALRLVLGIVLLFWACFLPFWL----WQLLAQYHQAPLAPRTARIVNYLTTC--LTYGNSCANPFLYTLLTRNYRDHLRGRVRGPGSGGGRGPVPSLQPRARFQRCSGRSLSSCSPQPTDSLVLAPAAPARPAPEGPRAPA |
4RWA Chain:A ((125-406)) | -----------------------------------------------------ITALYSAVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADALATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVPIMV-MAVTRPRDGAVVCMLQFPSPSWYWDTVTKICVFLFAFVV--PILIITVCYGLMLL---------GSKEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDIDRRDPL------VVAALHLCIALGYANSSLNPVLYAFLDENFKRCFRQLC----------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RWA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -205481 for 1921 contacts (-107.0/contact) +
2D Compatibility (PS) -26308 + (NN) -4045 + (LL) 2420
1D Compatibility (HY) -30000 + (ID) 4450
Total energy: -267864.0 ( -139.44 by residue)
QMean score : 0.334
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