Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTHTLYPTPFALYPINISAAWHLGPLPVSCFVSNKYQCSLAFGATTGLRVLVVVVPQTQLSFLSSLCLVSLFLHSLVSAHGEKPTKPVGLDPTLFQVVVGILGNFSLLYYYMFLYFRGYKPRSTDLILRHLTVADSLVILSKRIPETMATFGLKHFDNYFGCKFLLYAHRVGRGVSIGSTCLLSV--FQVITINPRNSRWAEMKVKAPTYIGLSNILCWAFHMLVNAIFPIYTTGKWSNNNITKKGDLGYCSAPLSDEVTKSVY-AALTSFHDVLCLGLMLWASSSIVLVLYRHKQQVQHICRN------------------------------------------------------------------------------------------------------------------------------------------------------NLYPNSSPGNRAIQSILALVSTFALCYALSFITYVYLALFD-----------NSSWWLVNTAALIIACFPTISPFVLMCRDPSRSRLCSICCRRNRRFFHDFRKM |
| 3ODU Chain:A ((54-501)) | -------------------------------------------------------------------------------------------IYSIIFLTGIVGNGLVILVMGYQ---KKLRSMTDKYRLHLSVADLLFVI-T-LPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIV-HATNSQ----RPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSE-------ADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVLFQ-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ODU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -141759 for 1967 contacts (-72.1/contact) +
2D Compatibility (PS) -29036 + (NN) -6390 + (LL) 7528
1D Compatibility (HY) -13600 + (ID) 2100
Total energy: -185357.0 ( -94.23 by residue)
QMean score : 0.194
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