Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------AVTCGDV--DASLLPCVAYLTGKA-----------------AAPSGDCCAGVRHLRTLPVGTAERRFACDCVKKAAARFKGLNG-----------DAIRDLPAKCAAPLPFPLSLDFDCNTIP
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEM--------ENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDVSGGRCS
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21195 for 539 contacts (-39.3/contact) +
2D Compatibility (PS) -8596 + (NN) -3325 + (LL) 404
1D Compatibility (HY) -2800 + (ID) 750
Total energy: -36262.0 ( -67.28 by residue)
QMean score : 0.173
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: