Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACEVGQLTVCMPAITTGA--KPSGACCANLRAQQ-ACFCQYAKDPSLGAY-IRSPHASETLVSCGLAVP-HC
2RKN Chain:A ((9-77))
---QDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34042 for 378 contacts (-90.1/contact) +
2D Compatibility (PS) -6334 + (NN) -800 + (LL) 304
1D Compatibility (HY) -4000 + (ID) 1150
Total energy: -46022.0 ( -121.75 by residue)
QMean score : 0.361
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: