Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ATCTPTQLTPC-----APAIVGNSP-----------------PTAACCGKLKAHPASCFCQYKKDPNMKKYVNSPNGKKVFATCKVPLPKC
2KSS Chain:A ((21-106))
-MIQDPSLIICHDVDGAPVRIGAKVKVVPHSEDGTISQRFLGQTGIVVGLVFDDPAT---QYPDDPLIQVLVEGL-GEDLFFPEELELAPE
General information:
TITO was launched using:
RESULT:
Template:
2KSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 16135 for 351 contacts (46.0/contact) +
2D Compatibility (PS) -6680 + (NN) -1575 + (LL) 308
1D Compatibility (HY) -4800 + (ID) 850
Total energy: 2538.0 ( 7.23 by residue)
QMean score : 0.271
(partial model without unconserved sides chains):
PDB file :
Tito_2KSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KSS-query.scw
PDB file :
Tito_Scwrl_2KSS.pdb
: