Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---QAPPPVQC-----DPGKLSACAVPIFF-------------GTAPSKSCCSNLRAQEKDGCFCQYARDPMYASYINS------TNARNTIAACGIAFPSC--
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLD-EKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQPCQM
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42251 for 490 contacts (-86.2/contact) +
2D Compatibility (PS) -7363 + (NN) 2341 + (LL) 64
1D Compatibility (HY) -4800 + (ID) 600
Total energy: -52609.0 ( -107.37 by residue)
QMean score : 0.259
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: