Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVVRVEEEEKVVCIVTDLRVCLPAVEAGS--QPSVQCCGKLKEQL-SCLCGYLKIPSFTQY-VSSGKAQKVLTACAIPIP-KC
2RKN Chain:A ((9-77))
--------------QDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29371 for 378 contacts (-77.7/contact) +
2D Compatibility (PS) -6148 + (NN) -1273 + (LL) 1992
1D Compatibility (HY) -3200 + (ID) 1000
Total energy: -39000.0 ( -103.17 by residue)
QMean score : 0.259
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: