Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--TVVGGWGIEEKAACIVTNLMSCLPAILK-------------GSQPPAYCCEMLKE-QQSCLCGYIKS------PTFGHYVIPQNAHKLLAACGILYPKC--
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQPCQM
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60048 for 535 contacts (-112.2/contact) +
2D Compatibility (PS) -8105 + (NN) 1303 + (LL) 0
1D Compatibility (HY) -800 + (ID) 750
Total energy: -68400.0 ( -127.85 by residue)
QMean score : 0.360
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: