Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------KDECGATPPDQEALKLVPCVAAGKDPDSKPSDRCCAAVKEIGERSPACLCAVLLSKIVRRVGVKP-EVAITIPKRCDLTDRPIGYKCGDYTMPSLQLKD--
1A8Y Chain:? ((127-228))
VELIEGERELQAFENIEDEIKLIGYF---KNKDSEHYKAFKEAAEEFHPYIP--FFATFDSKVAKKLTLKLNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRRS
General information:
TITO was launched using:
RESULT:
Template:
1A8Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21018 for 642 contacts (-32.7/contact) +
2D Compatibility (PS) -9872 + (NN) -485 + (LL) 316
1D Compatibility (HY) -2000 + (ID) 800
Total energy: -33859.0 ( -52.74 by residue)
QMean score : 0.304
(partial model without unconserved sides chains):
PDB file :
Tito_1A8Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1A8Y-query.scw
PDB file :
Tito_Scwrl_1A8Y.pdb
: