Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APAGTTCEQLESVARSCTGYLKRSLIFLNDACCDGAESVYDALTTDAAVDLGFVCRCLRGFVISESLR-PYLYRVANLPRLCRFKDRGPIPYNNSTIHDCRFSGTTRHSL
1BWO Chain:A ((2-88))
-----DCGHVDSLVRPCLSYVQGG-PGPSGQCCDGVKNLHNQARSQS--DRQSACNCLKGI--ARGIHNLNEDNARSIPPKCGV----NLPYTISLNIDCS---------
General information:
TITO was launched using:
RESULT:
Template:
1BWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61793 for 572 contacts (-108.0/contact) +
2D Compatibility (PS) -8655 + (NN) -350 + (LL) 1180
1D Compatibility (HY) -2400 + (ID) 1050
Total energy: -73068.0 ( -127.74 by residue)
QMean score : 0.301
(partial model without unconserved sides chains):
PDB file :
Tito_1BWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BWO-query.scw
PDB file :
Tito_Scwrl_1BWO.pdb
: