Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--AVSNCGQVVSYLAPCITYATG--RAPGPNGGCCSGVRSLNAAASTTADRQATCSCLKQQTSGMGGIKPDLVAGIPSKCGVNIPYAIKPSTDCTKVR--------------------
4HR1 Chain:A ((3-120))
FNGAQTVIQKISWLRTAIAFLKGYMETTGATKKELEQVEKLKERVDEIATAVNWDVYAQYARGDFNLLSDDEYKEIQKALLVLEDIKEQIIVEMLRVGLAQGQMGTLKISDYLDSLDS
General information:
TITO was launched using:
RESULT:
Template:
4HR1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24375 for 573 contacts (-42.5/contact) +
2D Compatibility (PS) -9072 + (NN) 6987 + (LL) 0
1D Compatibility (HY) -4000 + (ID) 650
Total energy: -31110.0 ( -54.29 by residue)
QMean score : 0.270
(partial model without unconserved sides chains):
PDB file :
Tito_4HR1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HR1-query.scw
PDB file :
Tito_Scwrl_4HR1.pdb
: