Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-AIECSDVLSRPVHCLSYFVTPRATLTPTSACCRESEEVLGMANSMGAKEDLCNCFVGLIRGFR--------PNPNKIEGLLSSCALQLFFPIDPVTALPDCTQIQ
2KSS Chain:A ((21-106))
MIQDPSLIICHDVDGAPVRIGAKVKVVPHSEDGTISQRFLGQ--------------TGIVVGLVFDDPATQYPDDPLIQVLVEGLGEDLFFPEELELAPE------
General information:
TITO was launched using:
RESULT:
Template:
2KSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19239 for 470 contacts (-40.9/contact) +
2D Compatibility (PS) -8002 + (NN) -2532 + (LL) 1124
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -31499.0 ( -67.02 by residue)
QMean score : 0.177
(partial model without unconserved sides chains):
PDB file :
Tito_2KSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KSS-query.scw
PDB file :
Tito_Scwrl_2KSS.pdb
: