Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACNPSELMACASSILQSK--PPTAQCCAKLKEQQ-PCFCQYKKDPSLKGY-INPANFKKVA-ACRVQVP-KC
2RKN Chain:A ((9-77))
---QDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18079 for 369 contacts (-49.0/contact) +
2D Compatibility (PS) -6529 + (NN) -4109 + (LL) 120
1D Compatibility (HY) -5200 + (ID) 800
Total energy: -34597.0 ( -93.76 by residue)
QMean score : 0.583
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: