Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTCSPVQLSPCLGPINSGA--PSPTTCCQKLREQR-PCLCGYLKNPSLRQY-VNSPNARKLASNCGVPVP-QC
2RKN Chain:A ((9-77))
----QDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15529 for 378 contacts (-41.1/contact) +
2D Compatibility (PS) -6567 + (NN) -4545 + (LL) 272
1D Compatibility (HY) -5200 + (ID) 900
Total energy: -32469.0 ( -85.90 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: