Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQTCAGQLRGLAPCLRYSVPPLPGQVPPAPGPECCSALGAVSR----------DCACGT----------FSIINSLPAKCGLPPVSCQ
1AFH Chain:A ((2-78))
-ISCGQVASAIAPCISYARGQG-----SGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVS-----
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28344 for 386 contacts (-73.4/contact) +
2D Compatibility (PS) -5786 + (NN) -4882 + (LL) 180
1D Compatibility (HY) -3200 + (ID) 800
Total energy: -42832.0 ( -110.96 by residue)
QMean score : 0.321
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: