Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGACGKTSPDQEAMKLAPCAMAAQDAKAAVSDSCCAQVRSIGQ-N-------PSCLCSVMLSDMAKAS-GIKAEIAITIPKRCNIANRPVGYKCGDYTLP
1AFH Chain:A ((3-80))
-------SCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKN-AAAGVSGLNAGNAASIPSKCGVSIP------------
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34449 for 509 contacts (-67.7/contact) +
2D Compatibility (PS) -7150 + (NN) -1560 + (LL) 228
1D Compatibility (HY) -2000 + (ID) 1100
Total energy: -46031.0 ( -90.43 by residue)
QMean score : 0.277
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: