Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------AVTCGDVVRT---LTPCISYVRY-------------GGPLPDNCCNGVKTLYGEAQTSADRQNVCKCIKSAVNGFSYS---NFNLGLAAGLPGKCGLHLPYTISPSTDCNKVQ
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL--------DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM-------SQPCQM--
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50096 for 523 contacts (-95.8/contact) +
2D Compatibility (PS) -7243 + (NN) 3012 + (LL) 984
1D Compatibility (HY) -5200 + (ID) 950
Total energy: -59493.0 ( -113.75 by residue)
QMean score : 0.183
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: