Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------AITCSQV--SSYLAPCIPYLRGSG---------------------GAVPSNCCSGIKNLNGAAQTSQDRKAACGCIKNA--AGSISGINYALASQMPSKCGVSIPYQISPNIDCNSVN
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN-------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18253 for 639 contacts (-28.6/contact) +
2D Compatibility (PS) -8512 + (NN) 1637 + (LL) 188
1D Compatibility (HY) -400 + (ID) 1150
Total energy: -26490.0 ( -41.46 by residue)
QMean score : 0.166
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: