Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVPCNTVDAK------AAACVGFATGKATKPSAECCTGLQQ--LAQTVKS---------------VDDKKAICRCLKAAAKSLGIQDKFLSK-IPQACNINVGFPVSINTNCETIH
2OP5 Chain:A ((5-115))
TDETAFLNSLFMDFTSENELELFLKSLDEVWSEDLYSRLSAAGLIRHVISKVWNKEQHRISMVFEYDSKEGYQKCQEIIDKEFGITLKEKLKKFVFKIHNNRGVVVS-----EFIR
General information:
TITO was launched using:
RESULT:
Template:
2OP5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7154 for 438 contacts (-16.3/contact) +
2D Compatibility (PS) -9416 + (NN) -3526 + (LL) 152
1D Compatibility (HY) -3600 + (ID) 1000
Total energy: -24544.0 ( -56.04 by residue)
QMean score : 0.296
(partial model without unconserved sides chains):
PDB file :
Tito_2OP5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OP5-query.scw
PDB file :
Tito_Scwrl_2OP5.pdb
: