Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QAPAPEPTAEAPGPDCFTNLLS--LSDCLTYVEAGS---------------NLTKPEKPCCPELAGLVESTPQCLCYLLDKNAT-------SSYGFNIDMNRALNLPTVCKVSTP-------PVSLCSG
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNE-MENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDVSGGRCS-
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30466 for 573 contacts (-53.2/contact) +
2D Compatibility (PS) -10176 + (NN) -5873 + (LL) 4
1D Compatibility (HY) -2400 + (ID) 950
Total energy: -49861.0 ( -87.02 by residue)
QMean score : 0.390
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: