Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------LTCPEVSKA--LVPCVTYLA-------------------TGSSFVHCCTQIRLLNSKANTTSDRQGVCRCLTSLAAQFQRRHRLNFNLVKQLPGKCNVNIRY--NITTQNPNCSQVK
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDVSGGRCS---
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33078 for 589 contacts (-56.2/contact) +
2D Compatibility (PS) -8610 + (NN) 2133 + (LL) 376
1D Compatibility (HY) 1200 + (ID) 650
Total energy: -38629.0 ( -65.58 by residue)
QMean score : 0.106
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: