Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVQGQGACN--AATLQPCLAASKG-TAAPTTQCCAAVKNVGGA---AGGPQCLCSLTTSALARANGV-NPDAAMAIPQKCG----LAVPKGFTCNNKPVPGS
1BWO Chain:A ((1-90))
-----IDCGHVDSLVRPCLSYVQGGP-GPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLN-EDNARSIPPKCGVNLPYTISLNIDCSRV-----
General information:
TITO was launched using:
RESULT:
Template:
1BWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29275 for 501 contacts (-58.4/contact) +
2D Compatibility (PS) -8109 + (NN) -2115 + (LL) 228
1D Compatibility (HY) -5200 + (ID) 1100
Total energy: -45571.0 ( -90.96 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_1BWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BWO-query.scw
PDB file :
Tito_Scwrl_1BWO.pdb
: