Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QAQCGGRNLSILAPCLPAAKANVQ-PSAACCRALSSFAT--NTG----EDCLCAAASSQQQSGAKVEFAKYIPQKCQLTYK----AGIVCNGVVIPGGQ
1AFH Chain:A ((4-92))
---CGQV-ASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV------
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39320 for 563 contacts (-69.8/contact) +
2D Compatibility (PS) -8043 + (NN) -2724 + (LL) 336
1D Compatibility (HY) -2800 + (ID) 1250
Total energy: -53801.0 ( -95.56 by residue)
QMean score : 0.294
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: