Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------SDACTGL---PGLLNCAPFLLGSV-----------------SSPDAKCCKSLKWLSQHAINREDKRELCKCLKIEDL---KHKGVILDRAKALPRLCKVQLPVPLIPDNKDCDKIKAADEE-
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCN-------FRAPQRCDLDVSGGRCS
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18218 for 598 contacts (-30.5/contact) +
2D Compatibility (PS) -9352 + (NN) -4501 + (LL) 576
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -34595.0 ( -57.85 by residue)
QMean score : 0.339
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: