Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------DQVCKGDFGSL-VEQCLQYVQKPGPKTPP-------------------SEGCCNAINTVDIPCVCQHLPPVVGDIVS------------LEKVAFVLRACGKPLEPGTKCGNYTVPPAV
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN--------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38180 for 598 contacts (-63.8/contact) +
2D Compatibility (PS) -8350 + (NN) -5873 + (LL) 312
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -55991.0 ( -93.63 by residue)
QMean score : 0.329
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: