Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GPY------------CRDVVET--ILPCIEYI----------------TTPGASTLPAPCCNGMKSLNGEPQYVCRCLKETFFVLPGLN-----------LAALAALPKNCGVNLPYQITPDMNCDKVN
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQG--CMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDVSGGRCS
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37275 for 510 contacts (-73.1/contact) +
2D Compatibility (PS) -9346 + (NN) -6751 + (LL) 284
1D Compatibility (HY) -4000 + (ID) 900
Total energy: -57988.0 ( -113.70 by residue)
QMean score : 0.257
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: