Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DPDPKCKNVAESIIP----CVEYI--MTPDASNPPAPCCNGM----TSLAGQVQALPERQFACRCIKDGIFDLPDLNLAALAAL------PNNCGVDLRF-----QITPDMDC------DNLN------------
4CHD Chain:A ((8-142))
DPFSRAKSLLKSTILHAERCKEFVGNMLEEYQDPAETTVQSLVPINTWGKSAKRKLQEEITSDPDWHQCPRKRAKMSYLAIIAGSIQDRDKKQTNVPRAFMLRGSQIEYDMKATRGLVVDTTNRIIVGGETVLRE
General information:
TITO was launched using:
RESULT:
Template:
4CHD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50894 for 610 contacts (-83.4/contact) +
2D Compatibility (PS) -10084 + (NN) -768 + (LL) 0
1D Compatibility (HY) 0 + (ID) 1100
Total energy: -62846.0 ( -103.03 by residue)
QMean score : 0.345
(partial model without unconserved sides chains):
PDB file :
Tito_4CHD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CHD-query.scw
PDB file :
Tito_Scwrl_4CHD.pdb
: