Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SPIKVVGAKKELPFCNLDLLACVQPFLVNGHGGKLPKGCCEKMKKST-SCMCRFLTAK---EQNLN-AAAHRIFWFCHISVP-NCPKI
2RKN Chain:A ((10-77))
----------------DELNECKP-AVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC---
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43208 for 368 contacts (-117.4/contact) +
2D Compatibility (PS) -6263 + (NN) -1186 + (LL) 820
1D Compatibility (HY) -1600 + (ID) 450
Total energy: -51887.0 ( -141.00 by residue)
QMean score : 0.358
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: