Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DYTRLMIQVHSYVPFCAYTYDY-----FSYCLDFL-TGYYYKPGKKCCVHIVKLNIIAKHKKENPRLLCNCVEMMTR-GYTPPMLADKIQQLPLLCNTHLSFPISSSMDCSTV----
1QYS Chain:A ((3-94))
-DIQVQVNIDDNGKNFDYTYTVTTESELQKVLNELMD-YIKKQGAK----RVRISITARTKKEAEKFAAILIKVFAELGYN-------------------DINVTFDGDTVTVEGQL
General information:
TITO was launched using:
RESULT:
Template:
1QYS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28969 for 535 contacts (-54.1/contact) +
2D Compatibility (PS) -8713 + (NN) -2806 + (LL) 1416
1D Compatibility (HY) 2000 + (ID) 350
Total energy: -37422.0 ( -69.95 by residue)
QMean score : 0.028
(partial model without unconserved sides chains):
PDB file :
Tito_1QYS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QYS-query.scw
PDB file :
Tito_Scwrl_1QYS.pdb
: