Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQLPILQVIIPIIASMLCFFTRKHKVSWFISFTTTIVTLFISSVLLIKTYNGETITYHLGNWAPPYGIELRIDVLNSLILTLVNFVALISVLYSFYINEKEISKNKITGLYSLFLLCLSGLLGILV---TNDIFNLYVFLEISSLSSYVLVSMGKDKKALVAAFEYLISGTIGATFYLLGIGLLYSTTGTLNMSDMAERIVPLYNNNIVKLGTLFIFVGLSNKMALFPLSRWLVNSYSEAPSFVSIFFSGTVTKVMIYVFIRIFYTVFHQNFFLLKLPLSNVIIILALCAIVFGSIFAITAKDIRRLFAHSSVSQIGYIILVLSLNSKIALSAAILHIINHSIIKTSLFMVAGCISYKFGTTKIENLSGLKKSMPYIAFAFTLLSLALVGVPLTNGFISKWYIINVIIESHARISLIVFVVGSFLALIYMWKAVEKMYFESDAVSCVEMTSGKTDVPFPMLFCPLFMATLTLVVGVYSNPIRLVVEKLVF |
4HEA Chain:N ((79-346)) | -----------------------------------------------------------------------------------------------------------SGRFEFYLLVLYAALGMHLLASTRHLLLMLVALEALSLPLYALATW-RRGQGLEAALKYFLLGALAAAFFLYGAALFYGATGSLVLGAPGEG--PLYALALGLLLVGLGF-----KAALAPFHFWTPDVYQGSPTPVVLFMATSVKAAAFAALLRV------------AAPPEALALLVALS-VVVGNLAALAQKEAKRLLAYSSIAHAGYMALALYTGNAQALG---FYLLTYVLATGLAFAVLSQISPD--RVPLEALRGLYRKDPLLGLAFLVAMLSLLGLPPLAGFWGKYLAFAEAARAGAWGVLVLALVTSAVSAYYYLGLGLAVFARPEETPFRPGPPWARAAVVAAGVLLLALGLLPGLVLPALAAGG-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4HEA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -251792 for 2220 contacts (-113.4/contact) +
2D Compatibility (PS) -26841 + (NN) -6226 + (LL) 13312
1D Compatibility (HY) -21200 + (ID) 4050
Total energy: -296797.0 ( -133.69 by residue)
QMean score : 0.255
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