Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQDSNASCNTGPFYKGVIKFLNQFQSRVNSEQSREDYVKESIIISLEDAISPFYSLVDKGVCYTIPNSERITLLDICVNQLVDNHRKIVHGVILLLSRLRRNRKSMLFNDKYFC
1DII Chain:A ((423-480))
-----------------------------------DYVAEFIV-----APRDMHHVID--VLYDRTNPEETKRADACFNELLDEFEKEGYAVYRVNTRFQDRVAQSYGPVKRKL
General information:
TITO was launched using:
RESULT:
Template:
1DII.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23201 for 257 contacts (-90.3/contact) +
2D Compatibility (PS) -5732 + (NN) 2474 + (LL) 1980
1D Compatibility (HY) -2800 + (ID) 950
Total energy: -28229.0 ( -109.84 by residue)
QMean score : -0.004
(partial model without unconserved sides chains):
PDB file :
Tito_1DII.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DII-query.scw
PDB file :
Tito_Scwrl_1DII.pdb
: