Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGEKKLKAAVVLSGCGHLDGAEVREVVLSLLVLDQQEVEVKCFAPDINITQVVNHKTTEAVKEKRNVLVEAARVARSEICDLKEAKAEDFDMLVVPGGYGVAKNLSDLAEDKEVVTVIPEFERLVSEFFATKKPIGAICISPAIIVSILSSKTSKGESKIKVTIGD--DREKLIEKLGGEHIKCDTGLSIEDEEHNVFSCSAYMRRDESTYSVYQGIKHMIDSMVKKTNKRI
1VHQ Chain:A ((8-197))
------KIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIF-------DFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTPAYMLAQNIAEAASGIDKLVSRVLVLAE----
General information:
TITO was launched using:
RESULT:
Template:
1VHQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135510 for 1653 contacts (-82.0/contact) +
2D Compatibility (PS) -19980 + (NN) -6031 + (LL) 700
1D Compatibility (HY) -15200 + (ID) 3950
Total energy: -179971.0 ( -108.88 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_1VHQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VHQ-query.scw
PDB file :
Tito_Scwrl_1VHQ.pdb
: