Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSYDVIISGGGLLGLITAVGLSNNSVSVAVIEKNNLPRIIDDNRAFAISQGSRKILEKLGIWQFIESEAEPI-----------LDICILDENSPITVHYNHKMVSEEPMGYVINSTVIWNAINNNFLNKLNIYSLHSYRTITCDAGYVEVTLGNNQ---KLISSLLICAEGKNSKLPGLFSMSIIKFDYKQSSIVFNVK--HELHHQNLAVEQFFPGGP-----------FAILPMKSG-YTSSIVWTEKSEISKMLMNLSEEEFIIELKKRFGSYLG--EVKL-----DGERKSYPLSFASAKKLYKSRVLLIGDAAHSIHPVAGQGLNLGIRDAESVVRQITAAKAFGIDVGSSYLLKKISRDRCLDNFTMALATDGLNRIFSNRIFCAKTLRNFGLMAVENSKFLKKRFIRHAMGFV |
4K2X Chain:A ((21-328)) | MRYDVVIAGAGPTGLMLACELRLAGARTLVLERLAEP--VDFSKALGVHARTVELLDMRGLGEGFQAEAPKLRGGNFASLGVPLDFSSFDTRHPYALFVPQVRTEELLTGRALELGA-------------ELRRGHAVTALEQDADGVTVSVTGPEGPYEVECAYLVGCDGGGSTVRKLLGIDFPGQDPHMFAVIADARFREELPHG-----------PYGVMRHDLRAWFAAFPLEPDVYRATVAFFD--------APVTEEDVRAALTEVAGSDFGMHDVRWLSRLTDTSRQ--------AERYRDGRVLLAGDACHIHLPAGGQGLNLGFQDAVNLGWKLGATIAGTAPPELLDTYEAERRPIAAGVLRNTRAQAVLIDPDPRYEGLRELMIELLHVPETNRYLAGLISALDVRYPM |
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General information:
TITO was launched using:
| RESULT:
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Template: 4K2X.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -159387 for 2042 contacts (-78.1/contact) +
2D Compatibility (PS) -27302 + (NN) -794 + (LL) 2680
1D Compatibility (HY) -10000 + (ID) 3600
Total energy: -198403.0 ( -97.16 by residue)
QMean score : 0.349
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