Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEEKDSNFAMEKPGNNYVGCISSENGECKNFYDLKLNFVKYNSGNNSSLYPYYYN--LENFGNFLEVDVKLRELIGLKKGLKD
4FMO Chain:A ((56-100))
---------------NYVGVVDEERRLAAIQHDLKLFLIDY----GSVCYELFYQIGLTDFANFGKINLQSTNVSDDIVLYNL
General information:
TITO was launched using:
RESULT:
Template:
4FMO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6292 for 189 contacts (-33.3/contact) +
2D Compatibility (PS) -4567 + (NN) 933 + (LL) 196
1D Compatibility (HY) -5600 + (ID) 850
Total energy: -16180.0 ( -85.61 by residue)
QMean score : 0.105
(partial model without unconserved sides chains):
PDB file :
Tito_4FMO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FMO-query.scw
PDB file :
Tito_Scwrl_4FMO.pdb
: