Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSFCVKAPAKINLFLHVVEKKETGYHLIEGLFVFANLSNFLEIKVGEKDFRYDNPIVEFVNSELKISNKYNTVMRAVNLLLRHAPVRTKVTVKVVKNIPTSAGLGSGSSDAGAVIRTLGKLWK--IDRPILNEIALSVGADVPASIDSKPVLVRGIGEELCYINKFSLPTNI---VLAKPKKKFLSTPEVF---SKYGGNFSKPIEWRDD------TEKDLLKLLKETENDLQEIAISLVPEIRDVILALESQEGSILSRMSGSGVTCFGIFDSEENAKTAAVNIREKQPEWWVCDAQLIV |
| 4ED4 Chain:A ((17-283)) | --AVTVRAPGKVNLYLAVGDL----YHELTTVFHAVSLAD--DVTVRDADVLSIDVVGQ--GEGTVPTDERNLAWQAAELFADHVGRAPDVSIFINKDIPVAGGMAGGSADAAAVLVAMNELWHAGVPRRDLHHLAAQLGSDVPFALHGGTALGTGRGEQLATV----LARNVFHWVFAFADGG-LATPQVFKEIDRLRENGDPPRLAEADELLGALAAGDARRLAPLLGNELQAAAVSLNPELRRTLRAGESA-GALAGIVSGSGPTCAFLCTSADDAVQVSAELAGAGVCRTVRVASGPV |
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General information:
TITO was launched using:
| RESULT:
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Template: 4ED4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -98962 for 2122 contacts (-46.6/contact) +
2D Compatibility (PS) -26974 + (NN) -5396 + (LL) 1276
1D Compatibility (HY) -8400 + (ID) 3900
Total energy: -142356.0 ( -67.09 by residue)
QMean score : 0.396
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