Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDVTILTIFPEMFPGFLNYSLAGKALEKKIWNLQVINIRFFAKDRHLTVDHIPYGGGAGMIMRPDVVGDAVDSVLSTHKDTKFIYMTPSGTKFDQSIARELVGFPHITILCGRFEGIDQRVIDEYTPYELSIGDYILSGGEPAAMVILDVCVRLLPGVVNNSGSITEESFSYSGGVLEYPQYTRPKQWRKHRVPKILLSGNHKKISDWRQKQSQVITKRRRPELLDGEINDKFT
3IEF Chain:A ((3-221))
-FQARVLTLYPEMFPGFLGCSLAGQALKQGIWSLETVQIRDFA-----SVDDTPAGGGAGMVMRADVLAAALDSC---PNDSPRLLMSPRGRLLNQAYARSLARSSGVTLVCGRFEGVDERIIEARELEEVSIGDYILSGGETAALVLLDAIVRLLPGVMGNEISAKCESF--ENGLLEHPQYTRPAVFEGRGIPPVLTSGHHKAIANWRQQQAESLTRQRRPDLYALYNKNRQ-
General information:
TITO was launched using:
RESULT:
Template:
3IEF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -181203 for 1517 contacts (-119.4/contact) +
2D Compatibility (PS) -23080 + (NN) -8478 + (LL) 956
1D Compatibility (HY) -20800 + (ID) 5600
Total energy: -238205.0 ( -157.02 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_3IEF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IEF-query.scw
PDB file :
Tito_Scwrl_3IEF.pdb
: