Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGNLSGTVDEVYGDHIILNVNDVGYIIYLSAKALNVCY---IGSKIKLLIETCANNRENTTQLYGFINKEEQSCLRLLVKVSGVSYKTAMSILSKLTPEQLFLAIMNEDKIAL-KISGLGPKLINRIITELSGKVSKLETNNNNFYP-INEDAVSALINLGYEKTKVYDTIKK-YKPNLDTKDIIRTALKELSNYEIDIMQ
1HJP Chain:A ((1-200))
MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPM----TCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGL--HGDLF--DAEQEAVAALVALGYKPQEASRMVSKIARPDASSETLIREALRAAL--------
General information:
TITO was launched using:
RESULT:
Template:
1HJP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134065 for 1270 contacts (-105.6/contact) +
2D Compatibility (PS) -19056 + (NN) -6479 + (LL) 908
1D Compatibility (HY) -10400 + (ID) 2850
Total energy: -171942.0 ( -135.39 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_1HJP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HJP-query.scw
PDB file :
Tito_Scwrl_1HJP.pdb
: