Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSLINPKVSAMFFDQIVTATDHNIAWEKIQNLLYNLYGEATYNSWLSSLKFVSSSNGEVLLSVPTRFIKEWITVHYMEKILLLWQNEDKSICSIDIQVTEEKNSSSSIISKNKEESVNNLGSPLDPRFTFDNFVVGKPNELAFTAAKRVAESIDPIPGSNPLFLYGGVGLGKTHLMHAIAWHIVNSPSAKR--KVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKVEQMNMYVPQDVLEFLARNIRSNIRELEGALNKVAHTSLIGRSMTVESASETLMDLLRSNHRSITIAEIQKKIAEFFNIKVTDMHSNRRLRSLVRPRQIAMYFAKKFTHKSLPDIGRSFGGRDHATVIHAVKQIENFIKTDSEFADEINQLRKMFK |
| 3R8F Chain:A ((4-317)) | ---------------------------------------------------------------------------------------------------------------------------LNPKYTLENFIVGEGNRLAYEVVKEALENLGSL--YNPIFIYGSVGTGKTHLLQA-----AGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEI-ELDNKTRFKIIKEKLKEFNLELRKEVIDYLLENTK-NVREIEGKIKLIKLKGFEGLERKERKERDKLM-------------QIVEFVANYYAVKVEDILSDK-NKRTSEARKIAMYLCRKVCSASLIEIARAFKRKDHTTVIHAIRSVEEEK---RKFKHLVGFLEKQAF |
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General information:
TITO was launched using:
| RESULT:
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Template: 3R8F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -169729 for 2323 contacts (-73.1/contact) +
2D Compatibility (PS) -33505 + (NN) -14573 + (LL) 10304
1D Compatibility (HY) -27600 + (ID) 5700
Total energy: -240803.0 ( -103.66 by residue)
QMean score : 0.549
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