Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYRIVSSNILKYKNCEPKIDESAFIAGDSHIVGKVEIGREASIWFNCVIRGDIGSIKIGDGTNIQDGTVIHVDRNPGGDTIIGDMVTVGHFCMLHACTVHDKALIGMGSIVMDHAIVESEAMVAAGSLVTHRKVIKSGEMWAGRPAKFFKKISDEEVKYITQSAQNYIMLMKKYKN
4MFG Chain:A ((5-167))
--------IRDYLEDKPLIDESVFVAKSADVIGNVKIGKDSSIWYNAVVRGDEGPITIGENTNIQDCSIVHGDT----ETIIGNNVTVGHRSIVHGCKISDNVLIGMGSIILDNAEIGEYTLIGAGTLITSNKKFPPGVLIMGSPGKVVRELTEEDKKYIDESYEWYLEAAQNQKY
General information:
TITO was launched using:
RESULT:
Template:
4MFG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127456 for 1382 contacts (-92.2/contact) +
2D Compatibility (PS) -17754 + (NN) -4631 + (LL) 96
1D Compatibility (HY) -13200 + (ID) 3450
Total energy: -166395.0 ( -120.40 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_4MFG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MFG-query.scw
PDB file :
Tito_Scwrl_4MFG.pdb
: