Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVMPDKWIREKAESFGMIEPFVDHKSSKGVMSFGLSSYGYDARVDNKFKIFTNVNSAVVDP---KDFSKNSFIDKETDVCIIPPNSFALASTVEYFHIPRDVLAICVGKSTYARCGIIVNVTP--LEPGWKGHVTLEFSNTTPLPAKIYANEGACQFVFLSGESECEKSYDDIKG--KYMNQHGITLPLVK
2QXX Chain:A ((33-178))
-----------------------------------------DVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSEHPYGSSRAGSKYQGQRGPTPSRSY
General information:
TITO was launched using:
RESULT:
Template:
2QXX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61519 for 936 contacts (-65.7/contact) +
2D Compatibility (PS) -15099 + (NN) -4685 + (LL) 2440
1D Compatibility (HY) -8000 + (ID) 2200
Total energy: -89063.0 ( -95.15 by residue)
QMean score : 0.360
(partial model without unconserved sides chains):
PDB file :
Tito_2QXX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QXX-query.scw
PDB file :
Tito_Scwrl_2QXX.pdb
: