Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKSIVQRNLRRIKLCDQYGEKRERLKSIINNKNIPIGERFAAQNKLIKELPRDSSKIRIRNRCALTGRPRGVYRKFGLCRIVLRGLCSFGKIPGITKSSW
4ADV Chain:N ((1-100))
-AKQSMKAREVKRVALADKYFAKRAELKAIISDVNA----RWNAVLKL-QTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW
General information:
TITO was launched using:
RESULT:
Template:
4ADV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7370 for 550 contacts (-13.4/contact) +
2D Compatibility (PS) -10051 + (NN) -5698 + (LL) 408
1D Compatibility (HY) -4000 + (ID) 2500
Total energy: -29211.0 ( -53.11 by residue)
QMean score : 0.363
(partial model without unconserved sides chains):
PDB file :
Tito_4ADV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ADV-query.scw
PDB file :
Tito_Scwrl_4ADV.pdb
: