Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSTSAIFFSEGSYIVIMNNIIVKKFGGTSLTDLTRVANLIKKDVDKGYRIIVVVSAIAGLTDQMVFQARQTLNLSHKQALSEYDVMLSAGEQISCGLLAITLLSIGVNAKSWLAWQLPIITDNSYSESKIKTIKI-DHLKRSFAEGYTVAIIAGFQGIYDD-RITTFGRGGSDISAVALAVAFGVRVCEIFTDIDGIYTADPKIVPKARKLKSISYDEMLEMSSSGAKILHNRSVQLAMKHNIKVQVLSTFK-EVEGTAVLHENDVLERHTITGITYSTNEALITFTNF------ANTLRTLKDMAGANIKIDMI-HGS-----SIVISEFDIDLM-----------KELLNKN--EDYVINNNAAKISIIGIGVMSVMYHTLKFF-----SEKKIEILAITASEIKISIIVQRECAEALVRDLHTELMCTEGG |
| 2HMF Chain:A ((122-467)) | -----------------------------------------------------------------------------------DYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLLPLLKEGI-IPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDME-MSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVVSEEDVDKALKALKREFGDF---LNNNLIRDVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKFIEK--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2HMF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -212650 for 2476 contacts (-85.9/contact) +
2D Compatibility (PS) -32890 + (NN) -4693 + (LL) 7716
1D Compatibility (HY) -23200 + (ID) 5050
Total energy: -270767.0 ( -109.36 by residue)
QMean score : 0.481
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