Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIIKTIEEKIRGSIDVIDVDIIDESVKHADHY-FSSSSMLPSHIKLVLISDNFAGMDSLKRHRLIYELLKSEIEL-IHAISLHLYTQSEYNLKNK
4PUG Chain:A ((10-95))
------MREKLQKELEPVELVIEDVSYQHAGHAGMKGRTDDETHFNVKIVSKGFEGMNLVKRHRLVYHLLREELDTGLHALSIVSKTPSESP----
General information:
TITO was launched using:
RESULT:
Template:
4PUG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65678 for 542 contacts (-121.2/contact) +
2D Compatibility (PS) -9028 + (NN) -2734 + (LL) 880
1D Compatibility (HY) -5600 + (ID) 1400
Total energy: -83560.0 ( -154.17 by residue)
QMean score : 0.562
(partial model without unconserved sides chains):
PDB file :
Tito_4PUG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PUG-query.scw
PDB file :
Tito_Scwrl_4PUG.pdb
: