Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVLVGKDTRLICQGFTGAQGTFHSEQAISYGTKMVGGVTPGKGGSSHLNLPVFNTVAEAKEKTDANATVIYVPAKFAAAAILEAIDAEIELIVCITEGIPILDMVRVKHALISSKSRLIGPNCPGIITPEECKIGIMPGHIHKRGHIGIMSRSGTLTYEAVAQTTAVGPGQSTCIGIGGDPIHGMTFVDCMELFLKDEDTHGIVVIGEIGGNEEEDVSHFVKTEKTKKPIVGFIAGQTAPPGRRMGHAGAIISSSGGSAGAKLEVMSSAGIAIAETPAMIGKKILEVMHKAHVA
1CQI Chain:A ((1-286))
-SILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIK-EHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTV-------
General information:
TITO was launched using:
RESULT:
Template:
1CQI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -196788 for 2546 contacts (-77.3/contact) +
2D Compatibility (PS) -31928 + (NN) -22360 + (LL) 1100
1D Compatibility (HY) -28800 + (ID) 9050
Total energy: -287826.0 ( -113.05 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_1CQI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CQI-query.scw
PDB file :
Tito_Scwrl_1CQI.pdb
: