Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKFVRLLSSILVALSVIFLGYCYFTKKGIFAPAVIHNAEVKIGGDFSLINQDGQVIRSNDFKDKYMMIFFGFSSCKKICPMNLGIISETLAKLDEKTS-DKLQTFFITVDPECDSTEKLKEFQQQFDYRIQMLTGERKKIDEVIANYKVYTSKVGGEEG----INHSSIIYLIGPGGKYVTHFAADLNSDESQSDKIAAEIKKYINEL
2GT5 Chain:A ((136-297))
------------------------------------------LGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAA-SIATHMRPYRKKS
General information:
TITO was launched using:
RESULT:
Template:
2GT5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61308 for 1105 contacts (-55.5/contact) +
2D Compatibility (PS) -17061 + (NN) -7384 + (LL) 4244
1D Compatibility (HY) -13600 + (ID) 2500
Total energy: -97609.0 ( -88.33 by residue)
QMean score : 0.338
(partial model without unconserved sides chains):
PDB file :
Tito_2GT5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GT5-query.scw
PDB file :
Tito_Scwrl_2GT5.pdb
: